xlr8r:CelleratorML


CelleratorML provides a way of storing Cellerator Models, including initial conditions and parameter values, as ASCII text files, using XML.

CellzillaML is an extension of CelleratorML that allows one to store Cellzilla models, including cell center or tissue description parameters.

All Cellerator reactions are represented in MathML. The entire MathML language is allowed, and in fact, is required, to represent Mathematica expressions. Cellerator identifiers that contain characters in Mathematica's extended character set (ISO8559-1) are represented by their ASCII escape codes.

A more detailed description of CelleratorML and CellzillaML is given in the spec link below.


Functions

CellzillaICToList
CellzillaModelToSXML
CellzillaModelToXML
GetCellzillaModel
GetModel
LatexForm
ListICToCellzillaIC
ModelToSXML
ModelToXML
SaveCellzillaModel
SaveModel
$CelleratorMLVersion

Other Links

Example CellzillaML xml file
Example CelleratorML xml file
Draft CelleratorML Spec
xCellerator (xlr8r) main page
Cellzilla main page
Downloads
  

Creative Commons License CC-GNU LGPL

The contents of this web page and its subsidiary web pages are licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License. Unless otherwise specified, all software posted on this and its subsidiary web pages are released under the CC-GNU LGPL version 2.1 or later.

xCellerator, Cellerator, xlr8r, cellzilla, growzilla and arrowzilla are trademarks of the authors and may not be used without permission. Cellerator and Cellerator based technology is protected under United States Patent Number 7,319,945.

[2009-06-20T15:54:17-0700 ]